Projects

• Project 1: Navigational queries
  • Part 1 is due on September 19 (test queries)
  • Part 2 is due on October 10 (test queries)
  • Details about Entrez Programming Utilities (eUtils) can be found online at NCBI.
    • PLEASE NOTE: You must run retrieval scripts on weekends or between 9 pm and 5 am Eastern Time weekdays for any series of more than 100 requests, AND make no more than one request every THREE SECONDS.
    • Sample wrapper Java codes for ESearch, ELink and EFetch can be downloaded.
  • Details about Entrez Utilities Web Service can be found online at NCBI. In order to use this web service, Simple Object Access Protocol (SOAP) is required.
    • Apache Axis runs on Linux, Unix and Mac OS X.
    • Mono runs on Linux, Unix, Mac OS X and Windows.
    • Microsoft .NET runs on Windows.
  
  
• Project 2: Data Modeling Exercise
  • OMIM-EntrezGene group members : Asad, Inbal, Sam (sample records)
  • OMIM-PubMed group members : Elena, Mike, Yao (sample records)
  • Schema is due on October 3
    • OMIM-EntrezGene
    • OMIM-PubMed